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Toward interoperable bioscience data.

Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bougueleret L, Burns G, Chapman B, Clark T, Coleman LA, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merrill E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios I, Hide W. Sansone SA, et al. Among authors: de daruvar a. Nat Genet. 2012 Jan 27;44(2):121-6. doi: 10.1038/ng.1054. Nat Genet. 2012. PMID: 22281772 Free PMC article.

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Genome evolution in yeasts.

Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, De Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich JM, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, De Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud JM, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard GF, Straub ML, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet JL. Dujon B, et al. Among authors: de daruvar a. Nature. 2004 Jul 1;430(6995):35-44. doi: 10.1038/nature02579. Nature. 2004. PMID: 15229592

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MolliGen, a database dedicated to the comparative genomics of Mollicutes.

Barré A, de Daruvar A, Blanchard A. Barré A, et al. Among authors: de daruvar a. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D307-10. doi: 10.1093/nar/gkh114. Nucleic Acids Res. 2004. PMID: 14681420 Free PMC article.

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Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins.

Plomion C, Lalanne C, Claverol S, Meddour H, Kohler A, Bogeat-Triboulot MB, Barre A, Le Provost G, Dumazet H, Jacob D, Bastien C, Dreyer E, de Daruvar A, Guehl JM, Schmitter JM, Martin F, Bonneu M. Plomion C, et al. Among authors: de daruvar a. Proteomics. 2006 Dec;6(24):6509-27. doi: 10.1002/pmic.200600362. Proteomics. 2006. PMID: 17163438

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Large-scale identification of human genes implicated in epidermal barrier function.

Toulza E, Mattiuzzo NR, Galliano MF, Jonca N, Dossat C, Jacob D, de Daruvar A, Wincker P, Serre G, Guerrin M. Toulza E, et al. Among authors: de daruvar a. Genome Biol. 2007;8(6):R107. doi: 10.1186/gb-2007-8-6-r107. Genome Biol. 2007. PMID: 17562024 Free PMC article.

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IPPRED: server for proteins interactions inference.

Goffard N, Garcia V, Iragne F, Groppi A, de Daruvar A. Goffard N, et al. Among authors: de daruvar a. Bioinformatics. 2003 May 1;19(7):903-4. doi: 10.1093/bioinformatics/btg091. Bioinformatics. 2003. PMID: 12724307

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A community standard format for the representation of protein affinity reagents.

Gloriam DE, Orchard S, Bertinetti D, Björling E, Bongcam-Rudloff E, Borrebaeck CA, Bourbeillon J, Bradbury AR, de Daruvar A, Dübel S, Frank R, Gibson TJ, Gold L, Haslam N, Herberg FW, Hiltke T, Hoheisel JD, Kerrien S, Koegl M, Konthur Z, Korn B, Landegren U, Montecchi-Palazzi L, Palcy S, Rodriguez H, Schweinsberg S, Sievert V, Stoevesandt O, Taussig MJ, Ueffing M, Uhlén M, van der Maarel S, Wingren C, Woollard P, Sherman DJ, Hermjakob H. Gloriam DE, et al. Among authors: de daruvar a. Mol Cell Proteomics. 2010 Jan;9(1):1-10. doi: 10.1074/mcp.M900185-MCP200. Epub 2009 Aug 11. Mol Cell Proteomics. 2010. PMID: 19674966 Free PMC article.

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Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome.

Sirand-Pugnet P, Lartigue C, Marenda M, Jacob D, Barré A, Barbe V, Schenowitz C, Mangenot S, Couloux A, Segurens B, de Daruvar A, Blanchard A, Citti C. Sirand-Pugnet P, et al. Among authors: de daruvar a. PLoS Genet. 2007 May 18;3(5):e75. doi: 10.1371/journal.pgen.0030075. PLoS Genet. 2007. PMID: 17511520 Free PMC article.

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ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome.

Taussig MJ, Stoevesandt O, Borrebaeck CA, Bradbury AR, Cahill D, Cambillau C, de Daruvar A, Dübel S, Eichler J, Frank R, Gibson TJ, Gloriam D, Gold L, Herberg FW, Hermjakob H, Hoheisel JD, Joos TO, Kallioniemi O, Koegl M, Konthur Z, Korn B, Kremmer E, Krobitsch S, Landegren U, van der Maarel S, McCafferty J, Muyldermans S, Nygren PA, Palcy S, Plückthun A, Polic B, Przybylski M, Saviranta P, Sawyer A, Sherman DJ, Skerra A, Templin M, Ueffing M, Uhlén M. Taussig MJ, et al. Among authors: de daruvar a. Nat Methods. 2007 Jan;4(1):13-7. doi: 10.1038/nmeth0107-13. Nat Methods. 2007. PMID: 17195019

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Observing metabolic functions at the genome scale.

Schwartz JM, Gaugain C, Nacher JC, de Daruvar A, Kanehisa M. Schwartz JM, et al. Among authors: de daruvar a. Genome Biol. 2007;8(6):R123. doi: 10.1186/gb-2007-8-6-r123. Genome Biol. 2007. PMID: 17594483 Free PMC article.

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